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1.
Artigo em Inglês | MEDLINE | ID: mdl-36733297

RESUMO

Most data in cold-atom experiments comes from images, the analysis of which is limited by our preconceptions of the patterns that could be present in the data. We focus on the well-defined case of detecting dark solitons-appearing as local density depletions in a Bose-Einstein condensate (BEC)-using a methodology that is extensible to the general task of pattern recognition in images of cold atoms. Studying soliton dynamics over a wide range of parameters requires the analysis of large datasets, making the existing human-inspection-based methodology a significant bottleneck. Here we describe an automated classification and positioning system for identifying localized excitations in atomic BECs utilizing deep convolutional neural networks to eliminate the need for human image examination. Furthermore, we openly publish our labeled dataset of dark solitons, the first of its kind, for further machine learning research.

2.
PeerJ ; 6: e5843, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30842892

RESUMO

Ecology has reached the point where data science competitions, in which multiple groups solve the same problem using the same data by different methods, will be productive for advancing quantitative methods for tasks such as species identification from remote sensing images. We ran a competition to help improve three tasks that are central to converting images into information on individual trees: (1) crown segmentation, for identifying the location and size of individual trees; (2) alignment, to match ground truthed trees with remote sensing; and (3) species classification of individual trees. Six teams (composed of 16 individual participants) submitted predictions for one or more tasks. The crown segmentation task proved to be the most challenging, with the highest-performing algorithm yielding only 34% overlap between remotely sensed crowns and the ground truthed trees. However, most algorithms performed better on large trees. For the alignment task, an algorithm based on minimizing the difference, in terms of both position and tree size, between ground truthed and remotely sensed crowns yielded a perfect alignment. In hindsight, this task was over simplified by only including targeted trees instead of all possible remotely sensed crowns. Several algorithms performed well for species classification, with the highest-performing algorithm correctly classifying 92% of individuals and performing well on both common and rare species. Comparisons of results across algorithms provided a number of insights for improving the overall accuracy in extracting ecological information from remote sensing. Our experience suggests that this kind of competition can benefit methods development in ecology and biology more broadly.

3.
Artigo em Inglês | MEDLINE | ID: mdl-28660231

RESUMO

The data dependency due to multiple use of the same subjects has impact on the standard error (SE) of the detection cost function (DCF) in speaker recognition evaluation. The DCF is defined as a weighted sum of the probabilities of type I and type II errors at a given threshold. A two-layer data structure is constructed: target scores are grouped into target sets based on the dependency, and likewise for non-target scores. On account of the needed equal probabilities for scores being selected when resampling, target sets must contain the same number of target scores, and so must non-target sets. In addition to the bootstrap method with i.i.d. assumption, the nonparametric two-sample one-layer and two-layer bootstrap methods are carried out based on whether the resampling takes place only on sets, or subsequently on scores within the sets. Due to the stochastic nature of the bootstrap, the distributions of the SEs of the DCF estimated using the three different bootstrap methods are created and compared. After performing hypothesis testing, it is found that data dependency increases not only the SE but also the variation of the SE, and the two-layer bootstrap is more conservative than the one-layer bootstrap. The rationale regarding the different impacts of the three bootstrap methods on the estimated SEs is investigated.

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